Results for "2D"
Bio-Scripts
Long reads mapper bash script !
...msa" ]; then echo "Mapping with $toolName" $lamsaLoc index $refFasta if [ $readsType == "ont" ]; then $lamsaLoc aln -t $thread -T ont2d $refFasta $longReads > $fileN...2138 days ago
Installing pb-assembly on Linux !
...h33da82c_1 conda-forge python-consensuscore: 1.1.1-py27h02d93b8_1 bioconda...3da82c_1 conda-forge python-consensuscore 1.1.1 py27h02d93b8_1 bioconda python-con...2049 days ago
- ...Expires=300&X-Amz-Signature=2ec8006aeb069dae00035e224e9c2af7b980de816d82672db24e2945fa8aaaf1&X-Amz-SignedH...Expires=300&X-Amz-Signature=2ec8006aeb069dae00035e224e9c2af7b980de816d82672db24e2945fa8aaaf1&X-Amz-SignedH...
2034 days ago
Setting up falconUnzip conda environments for genome assembly !
...y_0 87 KB conda-forge python-consensuscore-1.1.1 | py27h02d93b8_2 1.4 MB biocond...h33da82c_5 conda-forge python-consensuscore: 1.1.1-py27h02d93b8_2 bioconda...2005 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1740 days ago
Bash commandline to install Anaconda !
...37h1ba5d50_0 ... installing: cython-0.29.6-py37he6710b0_0 ... installing: distributed-1.26.0-py37_1 ... installing: get_terminal_size-1.0.0-haa9412d_0 ... installing: gevent-1.4...1570 days ago
Commands to install conda in Ubuntu !
...37h1ba5d50_0 ... installing: cython-0.29.6-py37he6710b0_0 ... installing: distributed-1.26.0-py37_1 ... installing: get_terminal_size-1.0.0-haa9412d_0 ... installing: gevent-1.4...1526 days ago
- ...497d5a1d433cb01c61a 5baf6ec5bb11291090b386ad85574a64db7bbb7a01d504e6d6174a80e05628bb Deleted Images: deleted: sha256:a62df23989f7419cfb04d9fee7fee8c6dcf548bbb0af6a63bd02d5629f2189f8 deleted: sha256:d...
1524 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...
1457 days ago
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1232 days ago
