Results for "3D genome"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubM...ent de novo assembly of large genomes using compressed data struct...software package] Comparing genomes and assemblies; variant dete...ty of California - Santa Cruz Genome Browser is on the FAQ list...3778 days ago
List of bioinformatics open source projects/software.
...Application that allows users to combine digital map data with information about biological sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...3756 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ALF A Simulation Framework for Genome Evolution http://www.cbrg.eth...lation test bed for hypotheses of genome evolution http://acb.qfab.org...ojects/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...omical composition of typical metagenome data sets http://ab.inf.uni-t...3736 days ago
Next generation sequencing in R or bioconductor environment
...Rsamtools, rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...al tools for SNP analysis: snpMatrix BSgenome BSgenome provides an object...leverages the biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pac...3624 days ago
Commercial and public next-gen-seq (NGS) software
...uences produced on a Illumina Genome Analyzer. A suite created by..., such as the human reference genome. By default, BWA finds an ali...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...zner from UCSD. (published in Genome Research)RMAP (A program for...3518 days ago
Using Interval Trees to Query Genome Annotations by Position
...y related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ htt...3548 days ago
Apps for Busy Bioinformatics Researchers !!!
...as NCBI, COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...s.apple.com/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...nd UniProt. SimGene alsocontains an integrated genome browser with information on g...3540 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
... (IBSD), Imphal, Manipur Institute of Life Sciences, Bhuvaneswar National Institute Of Immunology, New Delhi National Centre For Plant Genome Research (NCPGR), JNU, New De...2570 days ago
Software packages for next gen sequence analysis
...uences produced on a Illumina Genome Analyzer. A suite created by...f Nucleotide Databases. Whole genome alignments to a reference gen...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux....3242 days ago
Comprehensive list of visualization tools for biological pathways
.../Site/JDesigner.html KaPPA View Plant pathways http://kpv.kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.jp/kegg/ Omix Visuali...2286 days ago
