Results for "55"
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needlema...2919 days ago
- ...rgin = 50; $x0 = $y0 = $margin; $x1 = $y1 = $pixels - $margin; $img = new GD::Image($pixels, $pixels); $white = $img->colorAllocate(255,255,255); $black = $img->colorA...
2706 days ago
Perl script to count number of Ns in a multifasta file !
...CED_P2 perl countN.pl out.fasta scaffold1_size15575755 15575755 71824 0.004632631556...42 scaffold24_size1010466 1010466 93216 0.10162551103843 scaffold25_size100926...e218690 218690 9299 0.0444097406287758 scaffold55_size205658 205658 0 0 scaffo...2157 days ago
Perl script to find the distance beetween all the contigs and scaffolds
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; $| = 1; #Script to see the distance beetween all the contigs and scaffolds #Usage: perl clustalRea...2153 days ago
- ...mtools view -@ 40 -F4 -Sb - | samtools sort -m 3355443200 -@ 40 -no - - > /home/u...v2.6.6/trinity_out_dir/read_partitions/Fb_0/CBin_55 Monday, July 9, 2018: 11:17:...2.6.6/trinity_out_dir/read_partitions/Fb_0/CBin_155 Monday, July 9, 2018: 11:18:...
2140 days ago
- ...s://files.pythonhosted.org/packages/aa/53/dbdb521c8e36301108114878ff1620255c559c12ba8fe0ce2eaf9b65cbef/PyInt...MakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o [ 55%] Building CXX object lib/bam...
2112 days ago
Install Python locally on shared Linux server !
...cd ~/python wget https://www.python.org/ftp/python/2.7.11/Python-2.7.11.tgz tar zxfv Python-2.7.11.tgz find ~/python -type d | xargs chmod 0755 cd Python-2.7.11 #Then I...2111 days ago
Installing Busco version 4.0.6
...73.2 MB gcc_linux-64-7.3.0 | h553295d_18 22 KB conda...da-forge gfortran_linux-64-7.3.0 | h553295d_18 21 KB conda...les-1.1.1 | r36h6115d3f_0 558 KB conda-forge r-testt...1466 days ago
- ...644 plugins/jenv/README.md create mode 100644 plugins/jenv/jenv.plugin.zsh create mode 100644 plugins/swiftpm/_swift mode change 100644 => 100755 themes/trapd00r.zsh-theme Cu...
2088 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent...2066 days ago
