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Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp413 days ago
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of...rmance of Perl code. Here is a quick guide to benchmarking a...Write a simple benchmark program that exercises the functiona...and a reference to the benchmark subroutine. Here's an examp...430 days ago
Comment on "A quick guide to Phred scaling"
Phred scaling is a widely used system for representing the quality scores of sequencing read...uality scores are represented as integers ranging from 0 to 6...scale is logarithmic, which means that each increase of 10 in...format, which is a common format used for storing sequencing...430 days ago
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large...r short-read assembly using SPAdes: Quality control of r...tic or FastQC. Running SPAdes: After quality control, th...o evaluate the quality of the assembled genome. This can be d...430 days ago
- There are several tools available for short read simulators that are widely u...sequencing technologies such as Illumina, SOLiD, and 454. It...y used short read simulator that generates synthetic reads ba...t sequencing parameters, such as error rates, read lengths, a...
430 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl431 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Installing in CONDA env You can check using which perl - it should give you the perl that's located within your conda...ronment. In this case, it should install things into your conda-dire...package into. If you want to be extra-sure, you can also install mo...431 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/433 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble re...To run SPAdes, open the terminal and navigate to the director...ions for tuning the assembly parameters, such as adjusting th...436 days ago
Comment on "Tools for Sequence translation !"
...Sequence translation is the process of converting a DNA or RNA sequence into its...anslation, including: ExPASy Translate Tool: This is a w...ate nucleotide sequences into amino acid sequences. It suppor...upports several genetic codes and can handle multiple sequenc...436 days ago
