Run bash script in Perl program !
...t's a major problem for beginners to execute certain Unix/shell commands in Perl...nd, it keeps processing the script and does not wait until it finishes first, ret...function (perlfunc) that executes a command and waits for it to get finished firs...653 days ago
List of useful machine / ai learning resources !
ML cheatsheet ! https://github.com/remicnrd/ml_cheatsheet Visual AI / ML https://setosa.io/ev/ Simple and efficient tools for predictive data analysis https://scikit-learn.org/stable/1148 days ago
Frequently used bioinformatics tools for viral genome analysis !
...l 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplifying sequencing libraries. Quail, M. a et al. Nat. Methods 9,...1063 days ago
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Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignm...893 days ago
Useful Bioinformatics Analysis Tools !
...tiple sequence alignment designed for huge families of proteins (even containing hundreds of thousands of...t queries. • Danek, A., Deorowicz, S., GTC: how to maintain huge genotype collection...879 days ago
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List of comparative genomics resources !
...g and beyond Search for publicly available QTL data on livestocks a...gions of putative orthologous gene pairs from man, mouse, rat, fugu,...zation (ISGN) The first publicly available system reported to handl...nd over which species they were contained. Pristionchus.org --...693 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...1. A map of human genome sequence variation containing 1.42 million single nucle...Genet. Res. 8:269-294. 2. Maynard Smith and Haigh. 1974. The hitch-hiking eff...chard J. K., 2017 An expanded view of complex traits: from polygenic to omnigeni...693 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
...://arludo.com/ a compilation of resources: https://planted.botany.org/index.php?P=Home Finally, Donald Forsdyke has some great on-line videos explaining evolutionary principles...693 days ago