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Ensembl comparative genomics resources
...date genome data. Ensembl computes pairwise and multiple whole-genom...-base conservation scores and constrained elements are obtained. Gen...web-based visualizations are also available including synteny displa...mparative data and make it freely available. Database URL: http://w...2991 days ago
- ...me. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species,...
3012 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as input a...
3011 days ago
- ...ity annotations (maybe manually curated or experimentally verified) are available on the old assembly. Th...the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordin...
3009 days ago
- ...onceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It is also available through a simple web int...
3008 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command...items built from the following source code directories, which are freely available for all uses: - ken...3001 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server....
3000 days ago
- This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with prop...
2990 days ago
- ...rmation on this page is targeted at end-users. For developers, the source code, building instructions and implementation/development resources are available on GitHub. The Picard t...
2930 days ago
RNA-Seq De novo Assembly Using Trinity
...ns the full read set among these disjoint graphs. Butterfly then processes the individual graphs in parallel, tracing the paths that reads and pairs of reads take within the gr...2967 days ago
