Results for "AI"
Bio-Scripts
...0 libltdl-dev liblzma-dev libmail-sendmail-perl libmpx2 libncurses5-dev...ive.ubuntu.com/ubuntu bionic/main amd64 autotools-dev all 2018...ive.ubuntu.com/ubuntu bionic/main amd64 liblapack-dev amd64 3....iously unselected package libmail-sendmail-perl. Preparing to...1068 days ago
Install trimmomatic using Conda !
...atic Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. pkgs/main::certifi-2021.5.30-py37h06a4...1068 days ago
- ....json): done Solving environment: failed with initial frozen solve....xible solve. Solving environment: failed with repodata from current...LLED: boost pkgs/main/linux-64::boost-1.73.0-py37h...78a5_11 lz4-c pkgs/main/linux-64::lz4-c-1.9.3-h25316...
1060 days ago
- ...inux-64::odgi-0.6-py37hfecc14a_1 The following packages will be UPDATED: jemalloc bioconda::jemalloc-4.5.0-0 --> pkgs/main::jemalloc-5.2.1-h2531618_5...
1060 days ago
- #Long reads bedtools bamtofastq -i input.bam -fq output.fastq #For paired-end reads: samtools sort -n input.bam -o input_sorted.bam # sort reads by identifier-name (-n) bedtools bamtofastq -i input_sorted.bam -fq output_r1.fastq -fq2 output_r2.fastq
1010 days ago
- ...assebly directory already exists, BWISE will use it. Results will be stored in: /home/urbe/JitSimuStudy/test_phase_assebly usage: bwise [-h] [-x PAIRED_READFILES] [-u SINGLE_READ...
1004 days ago
Commandline for paired end reads simulation with BBMap !
...xed.fa out=reads_BBMAP250.fq paired interleaved reads=100k len...xed.fa out=reads_BBMAP250.fq paired interleaved reads=100k len...d.fa, out=reads_BBMAP250.fq, paired, interleaved, reads=100k,...Y=true REPLACE_NOREF=false paired=true read length=250 rea...1004 days ago
Commands to transfer files and folder in docker !
#To copy files between host machine and container (execute the commands on host, not inside container): $ docker cp FILE_OR_FOLDER_ON_HOST CONTAINER_ID:/CONTAINER_DIRECTORY #or $ docker cp CONTAINER_ID:FILE_OR_FOLDER_IN_CONTAINER HOST_DIRECTORY999 days ago
Tadpole is 250x faster than SPADes assembler !
...n2= Second input file for paired data. extra= Extra...t2= Second output file for paired output. outd= Wri...of correctness below this. minprobmain=t (mpm) Use minprob fo...If ecc is enabled, use the tail algorithm. eccfull=f...990 days ago
- ...ge in the terminal using conda. $ conda create -n myenv $ conda create -n myenv Python=3.7 $ conda env create -f environment.yml #List Available Conda Environments $...
975 days ago
