Results for "ANI"
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About me: An academic pursuit that will leverage the managerial, analytical and entrepreneurial skills I have gained during my education and internships to contribute towards the growth of the organization and my own in the service of community.2940 days ago
- Interests: genitic nd physochology and also paninting and travlingSkills: paninting
3773 days ago
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Blogs
List of tools frequently used while genome assembly
...Pilon (v. 1.18) Nanopolish (v. 0.8.3) I have used the following tools to assess genome assembly characteristics ANI.pl (https://github.com/chjp/ANI) CheckM (v. 1.0.7) Pro...1945 days ago
Bookmarks
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free c...le-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucl...red between two microbial genomes. FastANI supports pairwise comparison...curacy is on par with BLAST-based ANI solver and it achieves t...2138 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Un...nt to compare bacterial genomes and calculate their average nucleotide identity (ANI), you could download and run...2014 days ago
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News
Cleaner BLAST Databases for More Accurate Results
...ss-species screening (FCS-GX) detects contamination from foreign organisms in genomes and other seque...he genome cross-species aligner (GX) Average Nucleotide Identity (ANI) evaluates the taxonomic...27 days ago
Bio-Scripts
Script to rapid genome clustering based on pairwise ANI
...db -outfmt '6 std qlen slen' -max_target_seqs 10000 -perc_identity 90 -o -num_threads 32 Next, calculate pairwise ANI by combining local alignments between sequence pairs: anicalc.py -i -o Finally, pe...650 days ago
Tags
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies....Tags: fast, alignment-free, computation, whole-genome, Average, Nucleotide, Identity, ANI
2138 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species demarcation cut-off at 95~96% and large comparison studies have demonstrated both algorithms to produce near identical reciprocal similarities....Tags: OrthoANI, improved, algorithm, software, calculating, average, nucleotide, identity, ANI
1986 days ago
Comments
- ...ilable command line options. $ ./fastANI -h One to One. Compute ANI between single query and sing...asta format. One to Many. Compute ANI between single query genome a...multiple reference genomes: $ ./fastANI --ql [QUERY_LIST] --rl [REFER...
1116 days ago
