Nanopolis: polish a genome assembly
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanop...io/en/latest/quickstart_consensus.html Algorithms http://simpsonlab.github.io/2017/06/30/nanopolish-v0.7.0/2129 days ago
BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New...d, adjusted, and more review/adjustments in anticipation of a site redesign for 2017. A Plugin registration Blitz...2045 days ago
Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
Tool for detecting and cleaning PacBio / Nanopore long re...sp;https://github.com/swarris/Pacasus/blob/master/vib2017.pdf. The prepint version is found on http://www.biorxiv.org/content/early/2017/08/09/173872 It uses the pyP...2020 days ago
1581 days ago
Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1577 days ago
3D de novo assembly (3D DNA) pipeline
For a detailed description of the pipeline and how it integrates with other tools de...s2-HiC and the AaegL4 genomes reported in (Dudchenko et al., Science, 2017) see the original c...1573 days ago
1559 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently,&nbs...1002 days ago