Results for "ATGC"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...have developed a language of their own. They are pouring lots of money and energy to read the entire genomic text and understand the gods own code ATGC. It is somewhat fascinating,...2623 days ago
BBTools for bioinformatician !
...GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTG >Read2_adapt...GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCCGTCTTCTGCTTG If you have m...5:239:000000000-A74HF:1:2110:14788:23085 ATGA=8 ATGC=6 GTCA=6 AAAT=5 AAGC=5 AATG=5...2283 days ago
- +1 more Blogs
Bookmarks
PhyloGrapher - Graph Visualization Tool
...ments. In general, it is possible to use PhyloGrapher to visualize any type of relations between elements. More at http://www.atgc.org/PhyloGrapher/PhyloGrapher...2963 days ago
LoRMA: A tool for correcting sequencing errors in long reads
...Furthermore, when the coverage of the read set is at least 75×, the throughput of the new method is at least 20% higher. conda install -c atgc-montpellier lorma...2080 days ago
Wire posts
Fun
Bioinformatician special skills !!
.../){open(F,">$1")||warn"$1 write failed:$!";chomp;print F ">", $_}' There are 2 types of programmers in the world: one who understand ATGC, and other who don’t.3908 days ago
Bio-Scripts
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...ter\n". "Print out the name of sequences with characters other than ATGC-.\n". "If -m is specifie...it; sub AmbiguousChar { my $string = shift; $string =~ s/[ATGC-]//g; $string =~ s/\s+...2927 days ago
Find the number of each 2 consecutive characters AA, AC,AG,AT,CC,CA... with Perl
#!/usr/bin/perl -w use strict; my $subject = "AACGTACTGACGTACTGGTTGGTACGA"; my %results = (); while ($subject =~ m/[ACTG][ATGC]/g) { # matched text = $& if(exis...2922 days ago
- +5 more Bio-Scripts
Tags
How to count the occurance of letters in fasta file?
I received a new genome to annotated. I need your help to quickly count the occurance of all the letters in fasta file.Tags: Fasta, Count, Letters, ATGC, N, Others, Script
2978 days ago
