RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments usin...2963 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of H...diving head first into more advanced analysis tools such as HOMER. Setti...ranscript discovery and differential analysis with Cufflinks Differential...y or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expression...2943 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard so...2942 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2941 days ago
2779 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in q...2918 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a r...ts, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorith...2918 days ago
2918 days ago
2916 days ago
2905 days ago