Bioinformatics Algorithm Demonstrations and Tutorials
Abstract This project presents demonstrations of selected computer science algorithms important in bioinformat...platform for demonstration of algorithms, since various steps of the...ogramming experience. The algorithms demonstrated include two app...rg/downloads/bae/BioinformaticsAlgorithm...3704 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using...2951 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard so...2930 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a r...ts, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorithm...2906 days ago
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OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (h...folding. OPERA is based on an exact algorithm that is guaranteed to minimiz...including refinements to its basic algorithm (to reduce local errors, impr...ipt describing the new features and algorithm...2795 days ago
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