2628 days ago
FSA: Fast Statistical Alignment
...obabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or...imates, FSA builds a multiple alignment using only pairwise estim...bust: it can produce superior alignments of sets of homologous se...2644 days ago
2633 days ago
2633 days ago
2559 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomFor...2483 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation...s. It combines refine and tba tools to align either "draft" or "finished"...2480 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package...uml;the, M. Kirchner, F.A. Hamprecht (2011). SIMA: Simultaneous Muliple Alignment of LC/MS Peak Lists, Bioi...2353 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using...2326 days ago
xmatchview: smith-waterman alignment visualization
...teny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image for...erve as visual tools for analyzing cross_match alignments. Cross_match (Green, P....2319 days ago