RAMICS substantially outperforms other mapping approaches for alignment of coding DNA to reference sequences. http://hiv.sanbi.ac.za/tools#/ramics #Tools #Alignment #NGS #RAMICS
Alignathon: A collaborative competition to assess the state of the art in whole genome sequence alignment. http://compbio.soe.ucsc.edu/alignathon/index.html #Alignment #Simulation #Evolver
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references http://bioinformatics.oxfordjournals.org/content/30/12/i319.full #AlignGraph #Alignment #Algo #Referen