3480 days ago
Alignment of closely related whole genomes/scaffolds
...ngth, to aid in the study of populations, pan-genomes, and genome evolution.This bookmaks have been created to report new tools for whole genome alignments. Please report new whole gen...3011 days ago
3000 days ago
Ensembl comparative genomics resources
...date genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synten...-base conservation scores and constrained elements are obtained. Gene alignments are used to define Ensembl Pr...2980 days ago
YASS :: genomic similarity search tool
...lain text format (it produces local pairwise alignments). Like most of the heuristic...ions, and then tries to extend them to local alignments. This genomic search tool use...rsion) post-processing step to group gapped alignments...2917 days ago
2906 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order an...2906 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...nt mappings for all the generated data (sequencing technologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly accurate alignments, MOSAIK employs a hash cluste...2898 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relativ...2861 days ago
Bioinformatics tools and software
...PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. QSCORE >Compare two multiple alignments for benchmarking. PALS &...2853 days ago