2650 days ago
2644 days ago
FSA: Fast Statistical Alignment
...ods for Optimization and Control of Multiple Alignments." FSA brings the high accura...everal novel methods for constructing better alignments: FSA uses machine-learning...nment Display), can display the intermediate alignments produced by FSA, where each c...2644 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locati...ss a variety of computer platforms; indeed its name stands for "Local Alignments with Java". Currently it exis...2621 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
...RankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known referen...2537 days ago
AVID: A Global Alignment Program
...memory efficient, and practical for sequence alignments of large genomic regions up t...genomic regions and whole genome human/mouse alignments. We have also performed a qua...tablished a format for the representation of alignments and methods for their compari...2537 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...alizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multiple species by using prebuilt alignments in the UCSC genome browser da...2537 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...he existing CAZyme families based on sequence similarities; dbCAN make all pre-computed data freely available to the public, including sequence alignments, hidden markov models (H...2532 days ago
2505 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements...2480 days ago