AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotati...2306 days ago
Dot, an interactive viewer for genome-genome comparison
...plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new asse...lined coordinates file with an index that enables Dot to read in more alignments in certain regions on demand....2302 days ago
MUMmer4: A fast and versatile genome alignment system
...biologically realistic length. We show that as a result of these enhancements, the nucmer program in MUMmer4 is easily able to handle alignments of large genomes; ...2282 days ago
G-compass: a comparative genome browser
...mparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage (1,2...2214 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively ali...extensions for longer gaps less than for shorter ones to compute precise alignments. The gap model allows ngmlr t...2201 days ago
MIX: Combining multiple assemblies from NGS data
...genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. Th...2188 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
...trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters,...2167 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2163 days ago
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