Comment on "Which of the following programming language is best for a bioinformatics beginner?"
Well, if you are doing NGS analysis, C and C++ is a good option. It is a lower level language compared to R, PERL, & Python. But, due to the huge amount of data content in NGS, t...3545 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...e), one of the first biological module repositories that increase the usability from, for example, change formats (Bio::SeqIO) to do phylogenetic analysis. There are some biological so...3545 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract3562 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
...ins TYPE OF STATISTICAL ANALYSIS R MAT...bsp; Discriminant Analysis Yes Ye...actor & Principal Components Analysis Yes Ye... Cluster Analysis Yes Ye...3566 days ago
Comment on "R and Bioconductor Tutorial"
...o R course https://www.datacamp.com/courses/introduction-to-r> Data analysis and statistical inference cou...a professor from Duke University https://www.datacamp.com/courses/data-analysis-and-statistical-inference_min...3567 days ago
Comment on "List of popular bioinformatics software/tools"
Tools for next-generation sequencing analysis: http://ngsutils.org3585 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
Challenges and Solutions in the Analysis of Next Generation Sequence Data http://lh3lh3.users.sourceforge.net/download/sam-20100630.pdf3599 days ago
Comment on "List of popular bioinformatics software/tools"
There are different ways to perform exome sequence analysis, but GATK have a good guide for 'Best Practice': http://www.broadinstitute.org/gatk/guide/best-practices3602 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutoria...3637 days ago
Comment on "R and Bioconductor Tutorial"
R and Bioconductor for NGS data analysis http://master.bioconductor.org/help/course-materials/2012/CSC2012/Bioconductor-tutorial.pdf http://manuals.bioinformatics.ucr.edu/home/ht-seq3660 days ago