2166 days ago
2139 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern th...omainSweep -- protein annotation by domain analys...ORA -- Protein ANnotation Diagram ORiented Analysis Find informa...research approach to protein-binding sites analys...1999 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD...es tools, pipelines and workflows, compute resources, data analysis reports, and...s, database construction, genome research, and bioservices analys...1265 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus acc...transcriptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio Amplicon Analys...998 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes....w.jcvi.org/cms/research/projects/annotation-service/ Frequent command use for the analys...1211 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks dis...people have posted articles about the analys...First conda activate wgdstart our analysis environment,...on of All-vs-ALl + MCL classification analys...1161 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015...1053 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of...Variant annotation (SnpEff, SnpSift) Consensus assessment report (QUAST) Lineage analys...883 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S., CoMeta: Classification of Metagenomes Using k...870 days ago