List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Pro...d Genomes Compare structural and functional annotations of pro...tional QTL information mining and beyond Search for publicly a...u, Mus musculus, Danio rerio, and zebrafish. COXPRESdb --...691 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick B...et. Res. 23: 23-35. Understanding sequence variation 1. Beg...ics: variation in complex traits 1. Galton F., 1877 Typical l...of third chromosome bristle effects with...f the Neutral Theory in 1968 and 50 years on: a response to Kern a...691 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick B...et. Res. 23: 23-35. Understanding sequence variation 1. Beg...ics: variation in complex traits 1. Galton F., 1877 Typical l...of third chromosome bristle effects with...f the Neutral Theory in 1968 and 50 years on: a response to Kern a...591 days ago
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.o...558 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www...2666389921002300 4. A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Doc...A video by Dr.Keith A. Baggerly from MD Anderson [...workflows is automated using continuous analy...555 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can...nucleotide sequences from various organisms and can identify perfect, compound, and imp...equences. It can be used to analyze genomic and transc...t other tools are more appropriate for your analy...438 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physica...where a chromosome is broken and rearranged. Chromosome breaka...ct location of the breakpoint and the nature of the rearrangement,...thout any apparent phenotypic effects. Inversions occur when a chr...enetic diseases or phenotypic effects if...438 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an e...step in many types of genomic analysis, such as variant calling and gene expression ana...ailable, such as BWA, Bowtie, and HISAT2....he mapper is run with the command-lin...-processing: Depending on the analysis b...437 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides th...hey can be present in genomes and have various biological funct...mic structures. Dot plot analysis: Dot plot analysis is a graphical method th...g the genome sequence against itself and exa...iction enzymes, such as EcoRI and HindII...437 days ago
Calculate the significance of the difference between two trends
To calculate the significance of the difference...l test such as a t-test or ANOVA (ana...Define your null hypothesis (H0) and alternat...ndependent, normally distributed, and has...level, reject the null hypothesis and conclu...e software you use to perform the analy...432 days ago