Results for "Analysis tool"
Bookmarks
SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequ...p; Updated usage for bcftools.AboutSAMtools is a popular o...d in next-generation sequence analysis. This primer provides an...w to next-generation sequence analysis. The primer is also desig...2888 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphi...
2888 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data ge...are many situations where A5-miseq is not the right tool for the job. In order to prod...polyploid organisms. Use a different assembler if a tool like FastQC reports your data...
2832 days ago
- ...ng sense of these datasets demands integrative and easy-to-use software tools. Moreover, network representatio...tware that can take full advantage of network theory approaches for the analysis of chromatin interaction...
2884 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biolo...ology and bioinformatics community, to get benefited by performing down-stream anal...
2882 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUST...2876 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features in...
2868 days ago
- FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an in...
1287 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing mi...ome data. All the interactive tools you need in one application. Taxonomic analysis using the NCBI taxonomy or a...ers a large range of analysis tools, and is under active develop...
2856 days ago
- ...for learning more about PacBio data and bioinformatics analysis, and includes content suitabl...alized Applications: De Novo Assembly Transcriptome analysis Base Modification Analysis Barcoding Data Analysis Tools Minor Variants and Phasing...
2642 days ago
