Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline2972 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see ...comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformatics.btt086.long2965 days ago
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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built...make RAST a more useful research tool and to keep pace with advancements in bioinformatics, it has become desirable to b...2944 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, compute...). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics, 26(9), 1145-51. Tutorial at...2928 days ago
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Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of process...le Group) Bpipe has been published in Bioinformatics! If you use Bpipe, please cit..., Bpipe: A Tool for Running and Managing Bioinformatics Pipelines, Bioinformatics2920 days ago
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CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a ra...al@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online.2894 days ago