Results for "Annotated"
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Enrichr: a comprehensive gene set enrichment analysis
...ntly contains a large collection of diverse gene set libraries available for analysis and download. In total, Enrichr currently contains 180 184 annotated gene sets from 102 gene set l...2561 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate...2546 days ago
Genome Annotation Transfer Utility (GATU)
...genomes using genomes that have already been annotated. For example, whenever a new...y annotate the new strain using a previously-annotated strain of SARS CoV. This save...to map genes from the reference genome (the annotated strain) to the new sequence (...2529 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written...2494 days ago
- ...for my own needs so may not be as polished and feature-complete as a commercial program. In particular it is designed to display summarized and annotated trees produced by BEAST....
2478 days ago
- ...the problems with SNP annotation that arose when NCBI discontinued use of GI numbers. Please read carefully the Preface (page 3) and the File of annotated genomes section (pages 9-10)...
2336 days ago
- We have developed the Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome. We envisage its use during ann...
1379 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...d data from mapped data (BAM/SAM/bowtie etc) Creation of data groups for visualisation and analysis Visualisation of mapped regions against an annotated genome. Flexible quantitatio...2059 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and output...2010 days ago
KEGG Mapper – Reconstruct Pathway
...genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEGG Orthology (KO) iden...1967 days ago
