Genome assembly stats plotting
...ese presentations is generated using javascript from a common (JSON) data structure, allowing toggling between alternative views, and each can be applied to a single or multiple assem...2271 days ago
An Introduction to Applied Bioinformatics
IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can fi...2269 days ago
Reference-free prediction of rearrangement breakpoint reads
...ds) is based on a fast algorithm for all-against-all comparisons of short reads and theoretical analyses of the number of neighboring reads. When applied to a dataset with a sequencin...2263 days ago
Ranbow: a haplotype assembler for polyploid genomes
...genomes. It has been developed for the haplotype assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can also be applied to other polyploid genomes. A...2178 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding genes. After this tool was applied to scaffolding human contigs,...2167 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
...rders by connecting genes into contiguous regions based on predicted adjacencies. Computer simulation was used to validate the algorithm. We also applied the method to reconstruct the...2189 days ago
2096 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statistic...2017 days ago
BLAST options, setting and defaults
...of alignments to show (B) [integer] default = 15 default = 15 default = 15 default = 15 default = 15 default = 15 Query filter:filter applied to the query sequence defaul...1986 days ago
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