Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...long noisy reads (SMRT, ONT) using the Overlap-Layout Consensus (OLC) approach without the necessity of an e...agenomic samples and profiles their abundances (uses composition-based approach and non-negative least square...2385 days ago
Protein-Protein Interaction Sites Predictions !
...ction of protein interfaces using an empirical model ISIS Prediction of interaction hotspots from sequence KFC server Automated decision-tree approach to predicting protein-protein...2216 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Toward almost close...2179 days ago
Convert VCF to tab-deilimited table
...F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be converted to multiple_sample_GT.table using this approach.2196 days ago
Bioinformatics tools for genome assembly !
...ruijn graph assembler for long reads, efficient for very large genomes. Shasta: A long-read assembler that uses the Overlap-Layout-Consensus approach, suitable for PacBio and Nano...300 days ago