Results for "Array"
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Software developed in pevsner lab
...DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Be...abnormalities in parent-child trio-based microarray data...3491 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...analysis and comparison; methods and tools for docking; protein design Analysis of high-throughput biological data: Microarrays (nucleic acid, protein, array CGH, genome tiling, and other...3491 days ago
- ...d by the genomic location of chromosomal CNA-associated breaks by a genome-wide approach, which can be applied to DNA copy number data obtained by array-Comparative Genomic Hybridiza...
2146 days ago
- ...ect, record, struct, dictionary, hash table, keyed list, or associative array. An ordered list of values. In most languages, this is realized as an array, vector, list, or sequence....
2580 days ago
MUMmer4: A fast and versatile genome alignment system
...ersion of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved spe...2275 days ago
- ...deletion error. Here is how I use the blasr to align PacBio reads to the contigs (target.fasta). The “target.fasta.sa” is the suffix array from “target.fasta&rdqu...
2166 days ago
minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining, and SIMD-parallel Smith-Waterman-Gotoh extension.2165 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
...efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algorithm and extends t...1931 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...hared between two given sequences. The second key idea is to design a hardware accelerator design that adopts modern FPGA (field-programmable gate array) architectures to further boo...1636 days ago
odgi: optimized dynamic genome/graph implementation
...and path steps are recorded as deltas between the current node id and the target node id, where the node id corresponds to the rank in the global array of nodes. Graphs built from b...815 days ago
