2180 days ago
CGView - Circular Genome Viewer
CGView is a Java package for generating high quality,...uitable for the web. Feature information and rendering options are supplie...complete with labels, a title, legends, and footnotes. In addition to the...per https://academic.oup.com/bib/advance-article/do...2143 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jelly...K-mers found given a GC count and a K-mer count. comp: K-mer c...nce file. blob: Given, reads and an assembly, calculates both...ting tools to visualise K-mer and compare distributions. The fo...ief details of how to install and use KAT. For more extensive d...1979 days ago
LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcripto...C_requirements for running LSC. Download and set-up the LSC package. Foll...lication Kin Fai Au, Jason Underwood, Lawrence Lee and Wing H...2100 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 Licens...ether with links to separate scripts and their documentation. The scri...ts are compatible with Linux, Mac OS and the MS Windows 10 subsystem f...ps://academic.oup.com/bioinformatics/article/34...2092 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative micr...demonstrate the package by comparing and analyzing the diversity withi...nclude 16S rRNA phylogeny, basic DNA and codon statistics, proteome co...bsp;http://journals.plos.org/plosone/article?id...2080 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL script...If you want to compare bacterial genomes and calculate their average nucle...otide identity (ANI), you could download and run this program directly. Or...you. https://academic.oup.com/database/article/do...1997 days ago
1997 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
MACSE aligns coding NT sequences with respect to their AA translation w...ences to contain multiple frameshifts and/or stop codons. MACSE is henc...meshifts in public database sequences and in aligning next-generation s...SEquences accounting for frameshifts and stop c...1901 days ago
ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a numb...files include the resulting gene sequences, true tree and true MSAs. A description of ALF can be found in the following article:...1654 days ago