Results for "Assembly"
Bio-Scripts
Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary distributions are available so to install we can just download this distri...817 days ago
Bash command to explore assembly summary genbank !
wget https://ftp.ncbi.nlm.nih.gov/genomes/genbank/assembly_summary_genbank.txt pip3 install csvkit csvcut -t -K 1 -c 'excluded_from_refseq' assembly_summary_genbank.txt \ | tail -n +2 | tr ";" "\n" \ | sed -e 's/^ //' -e 's/ $//' | grep -v '""' \ | sort | uniq -c | sort -nr762 days ago
Perl script to calculate the basic stats of the assembled genome !
...# Input file containing the genome assembly in FASTA format my $input_file = 'genome_assembly.fasta'; # Create Bio::SeqI...Iterate through each sequence in the assembly while (my $seq = $seqio->nex...stics and information print "Genome Assembly Statistics:\n"; print "-----...88 days ago
Python script for basic stats of the assembled genome !
...# Input file containing the genome assembly in FASTA format input_file = 'genome_assembly.fasta' # Variables for com...Iterate through each sequence in the assembly for record in SeqIO.parse(in...istics and information print("Genome Assembly Statistics:") print("-------...88 days ago
- « Previous
- 1
- 2
- 3
- Next »
