Results for "Awk"

Users

Blogs

  • AWK for beginners !

    AWK is a standard tool on every P...scripting language. Why use AWK instead of Perl? Readability....There is an implied loop and AWK automatically reads and parse...articularly useful to prevent AWK from assuming the arguments...localvar, arr) { # AWK, being a string-processing la...

    1829 days ago

  • Run bash script in Perl program !

    ...;my $in, 'command', 'arg1', 'arg2'); 5.a2p syntax: a2p [options] [awkscript] There is a Perl utility known as a2p which translates awk command to Perl. It takes awk...

    630 days ago

Bookmarks

Top-level pages

Wire posts

  • zcat input_file.fastq.gz | awk 'NR%4==1{printf ">%s\n", substr($0,2)}NR%4==2{print}' > output_file.fa #fastaQ2fasta #fastaq #fasta #Oneliner

    3639 days ago

  • Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

    2137 days ago

  • +44 more Wire posts

Fun

Bio-Scripts

Groups

  • Awk

    Awk

    Awk is widely used these days for extracti...logical data in Unix/Linux.Most of the awk code is single liner. Useful...eblinks: http://www.grymoire.com/Unix/Awk.html http://www.hcs.harvard....t http://www.math.utah.edu/docs/info/gawk_5.html http://www.osnews.com...

    3912 days ago

Tags

  • Run bash script in Perl program !

    BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, standalone software/tools, and algorithms in bioinformatics programmes. Different modules are easy to instal and include, making it ...

    Tags: Perl, Bash, Script, awk, Module

    630 days ago

  • AWK for beginners !

    AWK is a standard tool on every POSIX-compliant UNIX system. It’s like flex/lex, from the command-line, perfect for text-processing tasks and other scripting needs. It has a C-like syntax, but without mandatory semicolons (although, you should use them anyway, because they are required when...

    Tags: AWK, UNIX, Learn, tutorial

    1829 days ago

Comments