Results for "B"
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Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp403 days ago
Comment on "Benchmarking Perl Module !"
...me and memory usage. This can be done using the Perl Benchmark module, which provide...rking a Perl module using the Benchmark module: Install...hat runs the code you want to benchmark. Here's an example of...ill output the results of the benchmark, including the number...421 days ago
Comment on "A quick guide to Phred scaling"
...eads. It is used to quantify the probability of an error in each base...e, the more confident we are in the base call. For example, a Phred...nds to a 10-fold decrease in the probability of an error. For examp...a Phred score of 20 is represented by the ASCII character "!" (33...421 days ago
Comment on "Short-read assembly using Spades !"
...nome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a pop...Quality control of raw reads: Before running the assembly, it...ep is to run SPAdes. This can be done through a command-line...ness and accuracy of the assembled genome by comparing it to...421 days ago
- ...There are several tools available for short read simulators that are widely used in bioinformatics research. Here a...ART is open-source and available for free download. wgs...simulator that uses a profile-based approach to generate synt...read simulators available for bioinformatics research. The ch...
421 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl421 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Installing in CONDA env You can check using which perl - it should give y...s installing the package into. If you want to be extra-sure, you can also ins...lower-case everything, and add 'perl-' to the beginning. In your case, conda...421 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/424 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads gene...quencing platforms. Here is a brief overview of how to use SP...tput directory where the assembled contigs will be saved....426 days ago
Comment on "Tools for Sequence translation !"
...data. There are several tools available for sequence translation, i...ExPASy Translate Tool: This is a web-based tool that allows users...esponding nucleotide sequence). BioPython: This is a Python lib...few examples of the many tools available for sequence translation. T...426 days ago
