Results for "BASE"

Blogs

  • Bioinformatics PhDs - Cover Letter

    ...ch opening, you will probably need at least two base versions that emphasize diffe...or level.  Rather, applicants are assessed based on where they are in their c...them.If you have TA'd some of the courses that (based on the job description) you...

    3378 days ago

  • Structural variation: the hidden genomic treasure

    ...solution of new detection methods, smaller variants (between 50 and 1000 base pairs) can now be accurately...ing data (paired end mapping, split reads, and depth of coverage), array-based approaches have proven to be...

    2715 days ago

  • Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection tools to study molecular evolution

    ...uction And Network Analysis Performs parsimony based inference of ancestral biolo...ed. GapAdj: Gapped Adjacencies A synteny-based method that is flexible enou...ion. Consensus sequences are then reconstructed based on a certain confidence leve...

    2543 days ago

  • DNA testing companies around the globe !

    ...separate, each building block (‘base’) accurately templates a corresponding base on the newly made strand of D...cated animals. The order in which the bases occur in DNA is referred to...uencing, whole genome sequencing) Genebase (deep ancestry, genealog...

    2499 days ago

  • String graph based genome assembly software and tools !

    ...squo;. Following are the genome assembly tools based on string graph: 1.SGA (Str...ne. SGA implements a set of assembly algorithms based on the FM-index. As the FM-i...d to most assemblers, which are de Bruijn graph based, SAGE uses the string-overla...

    2341 days ago

  • BBTools for bioinformatician !

    ...the paired output. BBSplit is based on BBMap, so it is also nond...his will trim all but the first 20 bases (all bases after position 19...le table. It can still do non-kmer-based operations such as quality t....fa,y.fa in1=read1.fq in2=read2.fq basename=o%_#.fq will produce o...

    2283 days ago

  • Understanding liftOver !

    ...y intersects multiple chains Duplicated in new: Sequence sufficiently intersects multiple chains Boundary problem: Missing start or end base in an exon For example: If...

    2172 days ago

  • Installing Trinity !

    ...ipt has type ‘char’ [-Wchar-subscripts] if (_base_to_int[c] > 3)...s type ‘char’ [-Wchar-subscripts] int val = _base_to_int[c];.../DNAVector.o obj/analysis/NonRedKmerTable.o obj/base/ErrorHandling.o obj/base/File...

    2145 days ago

  • Protocol for De novo Genome Assembly using Illumina Reads

    ...e sequencing system used, these "reads" range from 20 to 1000 nucleotide base pairs (bp) in length. Usually...enome finishing tools:Semi-automated gap fillers:Gap filler - http://www.baseclear.com/landingpages/basetoo...

    1217 days ago

  • Installing ELGG on Ubuntu !

    ...erver, run the following command to update your base system with the latest availa...written in PHP, and uses MySQL/MariaDB as a database backend, so you will need to...Next, grant all the privileges to the elgg database with the following command:...

    724 days ago