Results for "BBMap/BBTools package"
Bio-Scripts
conda install -c bioconda kat Collecting package metadata (current_repodata.js...lving environment: done ## Package Plan ## environment loca...28.8 MB The following NEW packages will be INSTALLED: boos...Downloading and Extracting Packages libboost-1.73.0 | 13.9...1060 days ago
- conda install -c bioconda odgi Collecting package metadata (current_repodata.json...Solving environment: done ## Package Plan ## environment loca...- odgi The following packages will be downloaded: p...237.6 MB The following NEW packages will be INSTALLED: odgi...
1060 days ago
- conda install -c bioconda seqwish Collecting package metadata (current_repodata.jso...olving environment: done ## Package Plan ## environment loca...- seqwish The following packages will be downloaded: p...4.6 MB The following NEW packages will be INSTALLED: seqw...
1060 days ago
- ...-c bioconda bwise Collecting package metadata (current_repodata.js...lving environment: done ## Package Plan ## environment loca...- bwise The following packages will be downloaded: p...4.9 MB The following NEW packages will be INSTALLED: bcal...
1003 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved reads=100k length=250 mininsert=400...1003 days ago
- ...install jellyfish Reading package lists... Done Building depen...mation... Done The following packages were automatically installed...em. The following additional packages will be installed: libjel...lecting previously unselected package libjellyfish-2.0-2:amd64. (R...
995 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh Written by Brian Bushnell Last modified July 16, 2018 Description: Uses kmer counts to as...989 days ago
- #Create a conda environment. #Install a Python package in the terminal using conda. $ conda create -n myenv $ conda...alytics-python $ conda env update -f environment.yml #Adding a Package to your YAML File name: ge...
975 days ago
Command line to create blast uniref database !
#The NCBI BLAST+ distribution does not include 'blastpgp', it has been replaced by the 'ps...blast' program. The 'blastpgp' program is available in the legacy NCBI BLAST package (no longer supported), which...964 days ago
- ...bioconda hhsuite Collecting package metadata (current_repodata.js...lving environment: done ## Package Plan ## environment loca...- hhsuite The following packages will be downloaded: p...30.0 MB The following NEW packages will be INSTALLED: _ope...
956 days ago
