Results for "BBMap/BBTools package"
Bio-Scripts
BBmap the reads with all alignments !
bbmap.sh in=../reference/reference.numbered.fa ambig=all vslow perfectmode maxsites=100000 out=fetch_Ids_for_barcode.sam839 days ago
- #GATK is a toolkit developed by the broad institute focused primarily on variant discovery...github. The creators of GATK recommend running GATK through conda which is a package, environment, and dependency...
833 days ago
- (base) [me@hn1 ME]$ conda update conda Collecting package metadata (current_repodata.js...- conda The following packages will be downloaded: p...3.7 MB The following packages will be REMOVED: entrez...0.24-pl526_0 The following packages will be UPDATED: coreut...
806 days ago
- ...assword for neelam: Reading package lists... Done Building depen...mation... Done The following package was automatically installed a...it. The following additional packages will be installed: libgsl...lecting previously unselected package libgslcblas0:amd64. (Reading...
686 days ago
Script to rapid genome clustering based on pairwise ANI
First, create a blast+ database: makeblastdb -in -dbtype nucl -out Next, use megablast from blast+ package to perform all-vs-all blastn...656 days ago
- (base) [lege@hn1 testVisanu]$ conda create -n pythonENV python=3.10 scipy=1.13.0 astroid babel Channels: - conda-forge - bioconda - defaults Platform: linux-64 Collecting package metadata (repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
13 days ago
