3933 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on....php) Genome Synteny Viewer allows users to upload files which contain synteny regions...en them. GSV also allows users to upload annotation files to visualize annotated region...2603 days ago
Bioinformatics PhDs - Cover Letter
OverviewThe reception your cover letter will receive is more varied and unpredictab...he faculty with whom you spoke. By the time people actually start to read files, months may have passed and e...3359 days ago
BioLinux Ubuntu Desktop folder and files disappeared !!
Restarted my BioLinux ubuntu computer after an update, and when I logged back in, I noticed that all of my files went missing. Instead of Desk...2994 days ago
Computer simulation of genetic mechanism !!
....net/projects/episimsimulator/files/ EvolSimulator A simulation test bed for hypotheses of genome evolut...based on the algorithm described in Padhukasahasram et al. 2008...RSS takes SAM alignment files from RNA-Seq data and simulat...2968 days ago
How to install Perl modules on Mac OS X in easy steps !!
Today at work, I learned how to install Perl modules us...elatively unimportant like installing man files. This will spend a long time downloading, testing, and compiling various files and dependencies. Bear with i...2747 days ago
Software and Tools to detect structure variation with long reads !!
...n this release: (1) a pre-processor that takes machineformat (.m5) BLASR files, and (2) MultiBreak-SV. For...al. 2014. SMRT-SV provides an official software package for tools described in Chaisson et al. 2014&nb...2601 days ago
Installing Perl environment on Linux
By using plenv, you can easily install and switch among different version of P...sion control and source code management software which can help you to download files from GitHub server. echo&nbs...2314 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA an...oOKSoftware for nanopore data, quality and error profileshttps://documentation.tgac.ac....ding tool https://sourceforge.net/projects/phusion2/files/smis/ List of assemb...2313 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore read...if the reads are in separate files Code: $ reforma...de-interleave reads into two files like this: Code: $ reform...in a single pass to minimize filesystem I/O. Personally, I never...duplicate reads from multiple files simultaneously, if they are c...2263 days ago