Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of h...tes (iVar variants and consensus; default for amplicon data || BCFTools, BEDTools; default for metagenomics...871 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads fro...n multiple sequence alignment files, Bioinformatics, 20...oriented compression of FASTQ files, Bioinformatics, 20...FaStore Compressor of FASTQ files. • Roguski,...in Variant Call Format (VCF) files. • Deorowicz...858 days ago
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Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field terminator is "\t|\t" Row terminator is "\t|\n" nodes.dmp file consist...654 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in man...n a format that is compatible with the mapper. Most mappers accept FASTQ or BAM files. Depending on the quality of...417 days ago