Results for "BED files"
Bio-Scripts
Perl subroutine for reading multifasta file !
sub readfasta { (my $file)=@_; my %sequence; my $header; my $temp_seq; #suppose fasta files contains multiple sequences; open (IN, "2139 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 g...astq' ]; Right read files: $VAR1 = [ '/media...LEL_STATS Converting input files. (both directions in parallel...K25.stats.sort -done opening files. CMD finished (85 seconds)...ity_out_dir/partitioned_reads.files.list.ok Monday, July 9, 2018...
2122 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage:...ce length >= -R|--read-filter Split into files by READ_FILTER value...according to splitting criteria. --split-files Dump each...
2121 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed...line 84. Deleting gcov-generated files Deleting cover-generated html files init::manifest - Chec...uto::ops - Which opcode files should be compiled in...........enerate a list of platform object files...........done. auto::aligno...1532 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa...sam else echo "Unknown mapper name and parameter !" fi echo "Getting files ready for visualization !" $...2118 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rr...be recursively searched for FASTQ files (required) -o OUTPUT, --ou...de and saved to separate files in this directory...2101 days ago
- set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home/urbe/Tools/Reapr...__________________________________________________ All looked OK so cleaning files... " #rm -fr out.* ech...
2094 days ago
- ...b/bamtools-2.3.0/src/api/CMakeFiles/BamTools-static.dir/SamProgra...Building CXX object src/CMakeFiles/sniffles.dir/Alignment.cpp.o...s/sniffles.dir/tree/Intervall_bed.cpp.o [ 64%] Building CXX obje...CMakeFiles/sniffles.dir/print/BedpePrinter.cpp.o /home/urbe/Tool...
2094 days ago
- ...rvals in various formats BedToIntervalList (Picard) Converts a BED file to a Picard Interval List....t intervals into sub-interval files. -------------------------...Sorts one or more VCF files. SplitVcfs (Picard)...
2070 days ago
- .../asdf/asdf.plugin.zsh | 19 ++++-- plugins/bbedit/README.md...tools/theme_chooser.sh | 2 +- 140 files changed, 1710 insertions(+),...
2070 days ago
