Results for "BEDtools"

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  • bedtools

    Collectively, the bedtools utilities are a swiss-army knife of tools...s, set theory on the genome. For example, bedtools allows one tointersect,&...nalyses can be conducted by combining multiple bedtools operations on the UNIX comman...

    2636 days ago

Top-level pages

Wire posts

  • Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools

    2624 days ago

  • Bedtools wiki https://code.google.com/archive/p/bedtools/wikis/Usage.wiki #Wiki #Bedtools

    2532 days ago

  • +6 more Wire posts

News

  • pybedtools

    pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs (https://github.com/arq5x/bedtools), which are widely used for genomi...anipulation or "genome algebra". pybedtools extends BEDTools by offering...ions, at http://pythonhosted.org/pybedtools/. More at http://pythonhoste...

    3556 days ago

Opportunity posts

  • Bioinformatics WalkIn at NII

    ...nowledge of the following: Programming: Perl and Python. Operating system: Linux and Windows. NGS Analysis tools: Maq, BWA, Bowtie, SAM tools, BEDTools, MACS, Galaxy, FastQC, Bismar...

    3175 days ago

Bio-Scripts

  • Genome Covered !

    zero=$(bedtools genomecov -ibam BAM -g hg38.fasta -bga | awk '$4==0 {bpCountZero+=($3-$2)} {print bpCountZero}' | tail -1) nonzero=$(bedtools genomecov -ibam BAM -g hg38.fasta -bga | awk '$4>0 {bpCountNonZero+=($3-$2)} {print bpCountNonZero}' | tail -1) percent=$(bc

    2219 days ago

  • Installing pb-assembly on Linux !

    ...bcftools: 1.9-h4da6232_0 bioconda bedtools: 2.27.1-he9418...##########################################| Time: 0:00:00 3.76 MB/s bedtools-2.27. 100% |#################...

    2043 days ago

  • +10 more Bio-Scripts

Tags

  • pybedtools

    pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs (https://github.com/arq5x/bedtools), which are widely used for genomic interval manipulation or "genome algebra". pybedtools extends BEDTools by offering feature-level manipulations from with Python. See full online documentatio...

    Tags: Bioinformatics, Python, BEDtools, Pybedtools

    3556 days ago