Illumina based assembly pipeline steps !
...Choice of multiple variant calling and consensus sequence generation routes (iVar variants and consensus; default for amplicon data || BCFTools, BEDTools; default for metagenomics dat...874 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...ormatics 25(14):1754-60, 2009. PubMedCentral Improving SNP discovery by base alignment quality. Li H, Bioinformatics 27(8):1157-8, 2011. PubMed BEDTools: a flexible suite of utilitie...3777 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ants near candidate mutations”; Dependent upon- Boost, SAMtools, BEDtools; 3 step workflow Input: BAM...oncoding elements, modeling their mutation count; Dependent on C++ and BEDtools Input: multiple Output:...2906 days ago
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Installing pb-assembly on Linux !
...bcftools: 1.9-h4da6232_0 bioconda bedtools: 2.27.1-he9418...##########################################| Time: 0:00:00 3.76 MB/s bedtools-2.27. 100% |#################...2031 days ago
Tags: Bioinformatics, Python, BEDtools, Pybedtools
3544 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM
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