Results for "BLAST"
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PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying...2345 days ago
- Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer,...
2336 days ago
Bandage: interactive visualization of de novo genome assemblies
...s. Users can zoom in to specific areas of the graph and interact with it by moving nodes, adding labels, changing colors and extracting sequences. BLAST searches can be performed wit...2342 days ago
- Magic-BLAST is a tool for mapping large next-generation RNA or...ons. This is very different from other versions of BLAST, where each exon is scored as...a separate hit and read-pairing is ignored. Magic-BLAST incorporates within the NCBI...
2319 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...y selecting the type of identifier and pasting identifiers (one per line) or by using the gene ID search tool or with the BLAST search tool Click "Visua...2286 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One...847 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it ac...ivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed....2234 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short...DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast nucleotide databases in an at...2153 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...orthologous mappings and alignment identity estimates. Based on our experiments with complete and draft genomes, its accuracy is on par with BLAST-based ANI solver and it...2121 days ago
- Magic-BLAST is a tool for mapping large next-generation RNA or...ons. This is very different from other versions of BLAST, where each exon is scored as...a separate hit and read-pairing is ignored. Magic-BLAST incorporates within the NCBI...
2089 days ago
