Results for "BLAST"
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I am doing megablast of a contig against NR database, but unable to understand this -outfmt '6 qseqid staxids qstart qend sstart send qseq sseq evalue length' Can you please help me to undestand all these.Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS
2878 days ago
- Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View. For the full list of features, improvements and fixes, see the release notes:https://ncbi.nlm.nih.gov/tools/gbench/releasenotes New Features BLAST Tool: added s...
Tags: Bioinformatics, Analysis, Visualization, Genome, Workbench, BLAST, Tree View.
2867 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at: http://sourceforge.net/projects/brig If you have any questions or comments, post t...Tags: Bioinformatics, BLAST, Circular, Genome, Viewer, Ring
2776 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:http://sourceforge.net/projects/brig If you have any questions or comments, post th...
Tags: Bioinformatics, Analysis, Assembly, Genome, BRIG, Plot, View, BLAST
2637 days ago
- SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web. More at http://sequenceserver.com.
Tags: Bioinformatics, Analysis, BLAST, sequenceserver
2615 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a...
Tags: Bioinformatics, Alignment, DIAMOND, BLAST, DNA, Protein
2567 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, the text output is in some specific format. If the program is popular enough, there w...Tags: Convert, BLAST, output, CSV, blastn, megablast
2339 days ago
