Results for "BLAST Parser"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data...lowing error message. In this example, XML::Parser Perl module is missing. Can't locate XML/parser.pm in @INC (@INC contains:/us...e, let us search, download and install XML::Parser Perl module. I have downloade...3942 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous gene...sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST...2602 days ago
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Bookmarks
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest and also how to get new insight...you will see how to look efficiently for a particular protein sequence, how to blast...3629 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it p...of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ...2917 days ago
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Pages
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in sci...ary Sequence Analysis - Database Searching by B. Golding Jan 1996. Fasta, blast,...
3913 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quali...mic sequencing data for alignment, assembly, and/or BLAST identification. BugBuilder &...large genomes in the clouds BEAP 0.6 beta – Blast...2678 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra N...me readily available through the introduction of PsiBLAST [3]; studying evolutionary a...Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST...
3939 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the good co...arson talks about Protein Evolution Biological Sequences and Information BLAST HELP MANUAL BLAST...3122 days ago
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Wire posts
News
- How to operate blast via shell ? Is any one please tell me how .sh file operate a blast query in blast database
3913 days ago
- ...-scale sequence studies requiring BLAST-based analysis produce huge a...a to be parsed. There are several BLAST parsers are available, but they are...lope a new and fast fast package "BlaSTorage" to parse and store BLAST...ws comparable speed of more basic parser written in compiled languages...
3882 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jaye...aun. Algo Banya Apne. MOTIF mil gaya. BLASTa...3911 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician...nome make very fast, very accurate mistakes. Let's BLAST it. Some genome never has tr...develops random features. Go watch CINEMA and have BLAST.3712 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3900 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Deli...3889 days ago
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Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already install.../bin/perl - --notest -l $PERL_BASE/perl-5.24.1 App::cpanminus JSON::Parse XML::Parser XML::Simple LWP LWP::Simple L...
2136 days ago
Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation Fir...Download ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...instead http://ftp.ncbi.nlm.nih.gov/blast/...1139 days ago
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