Results for "BLAT"
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...lly curated or experimentally verified) are available on the old assembly. The idea is simple: align the new assembly with the old one (e.g., with BLAT), process the alignment data...3001 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for sta...with no arguments. The UCSC Genome Browser and Blat software are free for academi...tware, see http://genome.ucsc.edu/license/. The Blat and In-Silico PCR software ma...2993 days ago
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Genome Assembly Tools and Software - PART2 !!
...valuating the correctness of genome assemblies. Baa.pl 0.20 – use BLAT to ASSESS an ASSEMBLYBaa.pl is a simple script that parses the output of a BLAT run of a transcriptome vs. a...2680 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...cs for: reads, contigs and snps. Align/Assemble to a reference BFAST - Blat-like Fast Accurate Search Too...ng and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and ELAND. From the Wold lab....3513 days ago
Software packages for next gen sequence analysis
...- Fledgling commercial product. Align/Assemble to a reference * BFAST - Blat-like Fast Accurate Search Too...ng and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and ELAND. From the Wold lab....3237 days ago
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Video
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.3884 days ago
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List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.Tags: Bioinformatics, SamTool, SAM, BAM, IGV, BLAT, Software, Tools
3939 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage state...Tags: Bioinformatics, UCSC, Genome, Browser, Blat, Software
2993 days ago
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Comments
Comment on "Alignment of closely related whole genomes/scaffolds"
...fordjournals.org/content/27/3/334 In my works, I have also used BWA-SW, BLAT and LASTZ. However, LASTZ is not well-suited for aligning to many chromosomes at once. Whereas, the BLAT is difficult as PSL to BAM co...3013 days ago
