Computer simulation of genetic mechanism !!
...real data. https://github.com/adamewing/bamsurgeon Bayesian Serial SimCoal Bayesian Serial SimCoal, (BayeSSC) is...S BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct diff...2969 days ago
Tools and Method for Haplotype phasing !
Huge amounts of genotype data are being produced with rece.../~junliu/plem/ “Read-backed phasing” algorithm: http://www.broadinstitute.org/gsa/wiki/index.php/Read-backed_phasing_algorithm SHAPE-IT: http://www.gr...1333 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation b...otyping from depth of read mapping.2011a,2011b AGEa tools that implements an algorithm for optimal alignment of sequ...2697 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach...iant when you can have a parliament of tools deciding? Publication about the algorithm and “…the first...2602 days ago
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String graph based genome assembly software and tools !
In graph theory, a string graph is an ...nbsp;and Richard Durbin. iii) Simpson-Durbin algorithm is that it does not rely on d...sembly pipeline. SGA implements a set of assembly algorithms based on the FM-index. As th...2323 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is...T-REKS -- identification of Tandem REpeats in sequences with a K-meanS based algorithm Find information about tande...1987 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and varian...accuracy (Arang Rhie)● PanGenie – algorithm that leverages a pangenome re...sp;tama (Transcriptome Annotation by Modular Algorithms) – software designed f...986 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • &n...A., Deorowicz, S., QuickProbs – A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Process...858 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous...be used on both nucleotide and protein sequences. The tool uses a statistical algorithm to identify repeats based on...417 days ago