3862 days ago
Public Databases for Bioinformatics !
...n def write( self, data ): self.lock.acquire....cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz. For use case....cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz For use case 3 we used the ENCODE datasets https://www.encodepr...1152 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is...ts, this influx of DNA sequence data has encouraged laboratory scientists to engage large datasets in comparative sequence a...of biologists to analyze large datasets by using sophisticated co...ers when analyzing genome scale datasets.3799 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that...3718 days ago
3666 days ago
Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide share...ology. Recently faced with an unprecedented flood of data generated by the next generat...ing infrastructure upgrades, staffing, and tools for data analyses and management ......3651 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering...ex, reproducible workflows for NGS microbiology data analysis. Enabling microbiolo...rchers to conduct their own custom analysis and data manipulation without software...3587 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS ana...ploys a reference genome, including how reads from a dataset are mapped, gene annotatio...3597 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel wo...ows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via...3587 days ago
3527 days ago