2718 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...end of every gene in the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enab...2681 days ago
2656 days ago
zPicture: A dynamic blastz alignment visualization
zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.2284 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...TF program for detecting evolutionarily conserved transcription factor binding sites in multiple alignments....ted in GALA can be viewed in Mulan, and conserved transcription factor binding sites identified with Mulan/m...2078 days ago
FRODOCK 2.0: fast protein–protein docking server
...ental distance constraints. The competitive success rates and efficiency achieved allow the retrieval of reliable potential protein–protein binding conformations that can be fur...2024 days ago
2005 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
...iological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverability of the TF binding motif, accuracy of TF-DNA binding detection, the sensitivity of...1865 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based global search strategy and a...1428 days ago
1417 days ago