Results for "Bioinformatics"
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RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to generate comple...Tags: Bioinformatics, NGS, R, Rcircos, Package, Plot, Circle, Genome, Genes, Visualization
2913 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roch...Tags: Bioinformatics, NGS, MOSAIK, Algorithm, Short-Read, Mapping, Genomics, Map, Tool
2913 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
Tags: Bioinformatics, GKNO, Pipeline, Tool, Software
2913 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation ...
Tags: Bioinformatics, NGS, Stampy, Reads, Mapping, Map
2913 days ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
Tags: Bioinformatics, MAF, mafTools, Alignment, Multiple
2912 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google Group) Bpipe has been published in Bioinformatics! I...Tags: Bioinformatics, Bpipe, Tool, Manage, Bioinformatics, Pipelines
2912 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to see the usag...Tags: Bioinformatics, Stand-alone, Tools, Scripts, Use
2912 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Tags: Bioinformatics, Cytoscape, Software, Platform, Visualization, Networks, GO
2911 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
Tags: Bioinformatics, BioGPS, Genes, Prediction, Function
2911 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
Tags: Bioinformatics, ClueGO, GO, Cytoscope, Pie
2900 days ago
