An Introduction to Applied Bioinformatics
IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find...2271 days ago
2271 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is c...2252 days ago
SciLifeLab tutorial for bioinformatics analysis !
...ovember - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data 2015 Februa...September - Lund2017 November - Uppsala2018 February - Uppsala Introduction to Genome Annotation 2015 Ap...2225 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon...p;Roman Cheplyaka for the interview). It is available at both the bioinformati...2204 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to redu...ntig length. The Mix algorithm, approach and results were published in BMC bioinformati...2204 days ago
Jvarkit : Java utilities for Bioinformatics
Collection of Java tool kits for bioinformatics works: Jvarkit : Java utilities for Bioinformatics2173 days ago
2170 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good abil...nly designed by Bo Liu & Yan Gao and developed by Yan Gao in Center for Bioinformati...2197 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long re...2184 days ago