Results for "Biological Coding"
Bookmarks
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilit...efine Ensembl Protein Families, GeneTrees and homologies for both protein-coding and non-coding RNA genes. These resources ar...3003 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or pl...ion constrained spaced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Another simple, but...2939 days ago
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows by the day, quality assessment of the resulting assemble...
2931 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes...ollowing the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences....2928 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2908 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data withou...2894 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release...L, Han Y and He Q (2012). “clusterProfiler: an R package for comparing biolog...
2894 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promote...eraction datasets are important resources to infer distal gene targets of non-coding regulatory elements and to fa...
2883 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and pyt...
2881 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local...dels and alternative splicing events. It can deal with an arbitrary number of biolog...
2833 days ago
