1508 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...andard" for identifying homologs is to use reciprocal best hits (RBHs) which depends on performing a all-vs-all sequence comparison, usually using BLAST, to determine homology. Howev...1363 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
...ts is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers all necessary step...1272 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
...exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it ac...ivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.1205 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
...exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it ac...ivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.944 days ago
608 days ago
574 days ago