Next Generation Sequencing (NGS) Tutorials
...ysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http://www.broadinstitute.org/gatk/ Metagenomics:http:...3501 days ago
Integrative Genomics Viewer (IGV) tutorial
...that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants. http://www.broadinstitute.org/igv/...3599 days ago
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RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcrip...2979 days ago
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MEDEA: Comparative Genomic Visualization with Adobe Flash
...power of the human visual system to detect trends and spot outliers is necessary in such large and complex data sets. More at http://www.broadinstitute.org/annotation/medea/2945 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conse...2928 days ago
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